Biblatex issues

Rich Shepard rshepard at appl-ecosys.com
Thu Mar 25 20:40:42 UTC 2021


It's been a long time since I last wrote a document with a bibliography. I
have compilation issues on this one and cannot find a saved thread with the
solution.

I switched from bibtex to biblatex last year (or earlier) and want to use
the author-date format for citations. Since I upgraded to TeXLive-2020 I may
have lost changes that worked.

A MWE is attached (without the entire JabRef bibliography) as well as the
full error log. I don't understand why I'm getting errors when I try to
compile the file with pdflatex, yet the PDF is produced.

I'm confused.

TIA,

Rich
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\begin_body

\begin_layout Chapter
Chapter name
\end_layout

\begin_layout Standard
Because each dioxin, furan, and biphenyl congener has a different toxicity
 to organisms each congener's toxicity is related to what is accepted as
 the most toxic congener: 2,3,7,8-tetrachlorodibenzo-
\emph on
p
\emph default
-dioxin (TCDD).
 This is done using a toxicity equivalent weighting factor (TEF) determined
 by a group of experts for each class of organism 
\begin_inset CommandInset citation
LatexCommand citep
key "VandenBerg1998"
literal "true"

\end_inset

.
\end_layout

\begin_layout Standard
An example uses concentrations of trichloroethylene (TCE) in shallow ground
 waters of Long Island, NY 
\begin_inset CommandInset citation
LatexCommand citep
key "Eckhardt1989"
literal "true"

\end_inset

.
 
\end_layout

\begin_layout Standard
\begin_inset CommandInset bibtex
LatexCommand bibtex
btprint "btPrintCited"
bibfiles "/home/rshepard/documents/jabrefdb"
options "authordate4"

\end_inset


\end_layout

\end_body
\end_document
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   defining Unicode char U+1F64 (decimal 8036)
   defining Unicode char U+1F65 (decimal 8037)
   defining Unicode char U+1F66 (decimal 8038)
   defining Unicode char U+1F67 (decimal 8039)
   defining Unicode char U+1F68 (decimal 8040)
   defining Unicode char U+1F69 (decimal 8041)
   defining Unicode char U+1F6A (decimal 8042)
   defining Unicode char U+1F6B (decimal 8043)
   defining Unicode char U+1F6C (decimal 8044)
   defining Unicode char U+1F6D (decimal 8045)
   defining Unicode char U+1F6E (decimal 8046)
   defining Unicode char U+1F6F (decimal 8047)
   defining Unicode char U+1F70 (decimal 8048)
   defining Unicode char U+1F71 (decimal 8049)
   defining Unicode char U+1F72 (decimal 8050)
   defining Unicode char U+1F73 (decimal 8051)
   defining Unicode char U+1F74 (decimal 8052)
   defining Unicode char U+1F75 (decimal 8053)
   defining Unicode char U+1F76 (decimal 8054)
   defining Unicode char U+1F77 (decimal 8055)
   defining Unicode char U+1F78 (decimal 8056)
   defining Unicode char U+1F79 (decimal 8057)
   defining Unicode char U+1F7A (decimal 8058)
   defining Unicode char U+1F7B (decimal 8059)
   defining Unicode char U+1F7C (decimal 8060)
   defining Unicode char U+1F7D (decimal 8061)
   defining Unicode char U+1F80 (decimal 8064)
   defining Unicode char U+1F81 (decimal 8065)
   defining Unicode char U+1F82 (decimal 8066)
   defining Unicode char U+1F83 (decimal 8067)
   defining Unicode char U+1F84 (decimal 8068)
   defining Unicode char U+1F85 (decimal 8069)
   defining Unicode char U+1F86 (decimal 8070)
   defining Unicode char U+1F87 (decimal 8071)
   defining Unicode char U+1F88 (decimal 8072)
   defining Unicode char U+1F89 (decimal 8073)
   defining Unicode char U+1F8A (decimal 8074)
   defining Unicode char U+1F8B (decimal 8075)
   defining Unicode char U+1F8C (decimal 8076)
   defining Unicode char U+1F8D (decimal 8077)
   defining Unicode char U+1F8E (decimal 8078)
   defining Unicode char U+1F8F (decimal 8079)
   defining Unicode char U+1F90 (decimal 8080)
   defining Unicode char U+1F91 (decimal 8081)
   defining Unicode char U+1F92 (decimal 8082)
   defining Unicode char U+1F93 (decimal 8083)
   defining Unicode char U+1F94 (decimal 8084)
   defining Unicode char U+1F95 (decimal 8085)
   defining Unicode char U+1F96 (decimal 8086)
   defining Unicode char U+1F97 (decimal 8087)
   defining Unicode char U+1F98 (decimal 8088)
   defining Unicode char U+1F99 (decimal 8089)
   defining Unicode char U+1F9A (decimal 8090)
   defining Unicode char U+1F9B (decimal 8091)
   defining Unicode char U+1F9C (decimal 8092)
   defining Unicode char U+1F9D (decimal 8093)
   defining Unicode char U+1F9E (decimal 8094)
   defining Unicode char U+1F9F (decimal 8095)
   defining Unicode char U+1FA0 (decimal 8096)
   defining Unicode char U+1FA1 (decimal 8097)
   defining Unicode char U+1FA2 (decimal 8098)
   defining Unicode char U+1FA3 (decimal 8099)
   defining Unicode char U+1FA4 (decimal 8100)
   defining Unicode char U+1FA5 (decimal 8101)
   defining Unicode char U+1FA6 (decimal 8102)
   defining Unicode char U+1FA7 (decimal 8103)
   defining Unicode char U+1FA8 (decimal 8104)
   defining Unicode char U+1FA9 (decimal 8105)
   defining Unicode char U+1FAA (decimal 8106)
   defining Unicode char U+1FAB (decimal 8107)
   defining Unicode char U+1FAC (decimal 8108)
   defining Unicode char U+1FAD (decimal 8109)
   defining Unicode char U+1FAE (decimal 8110)
   defining Unicode char U+1FAF (decimal 8111)
   defining Unicode char U+1FB0 (decimal 8112)
   defining Unicode char U+1FB1 (decimal 8113)
   defining Unicode char U+1FB2 (decimal 8114)
   defining Unicode char U+1FB3 (decimal 8115)
   defining Unicode char U+1FB4 (decimal 8116)
   defining Unicode char U+1FB6 (decimal 8118)
   defining Unicode char U+1FB7 (decimal 8119)
   defining Unicode char U+1FB8 (decimal 8120)
   defining Unicode char U+1FB9 (decimal 8121)
   defining Unicode char U+1FBA (decimal 8122)
   defining Unicode char U+1FBB (decimal 8123)
   defining Unicode char U+1FBC (decimal 8124)
   defining Unicode char U+1FBD (decimal 8125)
   defining Unicode char U+1FBE (decimal 8126)
   defining Unicode char U+1FBF (decimal 8127)
   defining Unicode char U+1FC0 (decimal 8128)
   defining Unicode char U+1FC1 (decimal 8129)
   defining Unicode char U+1FC2 (decimal 8130)
   defining Unicode char U+1FC3 (decimal 8131)
   defining Unicode char U+1FC4 (decimal 8132)
   defining Unicode char U+1FC6 (decimal 8134)
   defining Unicode char U+1FC7 (decimal 8135)
   defining Unicode char U+1FC8 (decimal 8136)
   defining Unicode char U+1FC9 (decimal 8137)
   defining Unicode char U+1FCA (decimal 8138)
   defining Unicode char U+1FCB (decimal 8139)
   defining Unicode char U+1FCC (decimal 8140)
   defining Unicode char U+1FCD (decimal 8141)
   defining Unicode char U+1FCE (decimal 8142)
   defining Unicode char U+1FCF (decimal 8143)
   defining Unicode char U+1FD0 (decimal 8144)
   defining Unicode char U+1FD1 (decimal 8145)
   defining Unicode char U+1FD2 (decimal 8146)
   defining Unicode char U+1FD3 (decimal 8147)
   defining Unicode char U+1FD6 (decimal 8150)
   defining Unicode char U+1FD7 (decimal 8151)
   defining Unicode char U+1FD8 (decimal 8152)
   defining Unicode char U+1FD9 (decimal 8153)
   defining Unicode char U+1FDA (decimal 8154)
   defining Unicode char U+1FDB (decimal 8155)
   defining Unicode char U+1FDD (decimal 8157)
   defining Unicode char U+1FDE (decimal 8158)
   defining Unicode char U+1FDF (decimal 8159)
   defining Unicode char U+1FE0 (decimal 8160)
   defining Unicode char U+1FE1 (decimal 8161)
   defining Unicode char U+1FE2 (decimal 8162)
   defining Unicode char U+1FE3 (decimal 8163)
   defining Unicode char U+1FE4 (decimal 8164)
   defining Unicode char U+1FE5 (decimal 8165)
   defining Unicode char U+1FE6 (decimal 8166)
   defining Unicode char U+1FE7 (decimal 8167)
   defining Unicode char U+1FE8 (decimal 8168)
   defining Unicode char U+1FE9 (decimal 8169)
   defining Unicode char U+1FEA (decimal 8170)
   defining Unicode char U+1FEB (decimal 8171)
   defining Unicode char U+1FEC (decimal 8172)
   defining Unicode char U+1FED (decimal 8173)
   defining Unicode char U+1FEE (decimal 8174)
   defining Unicode char U+1FEF (decimal 8175)
   defining Unicode char U+1FF2 (decimal 8178)
   defining Unicode char U+1FF3 (decimal 8179)
   defining Unicode char U+1FF4 (decimal 8180)
   defining Unicode char U+1FF6 (decimal 8182)
   defining Unicode char U+1FF7 (decimal 8183)
   defining Unicode char U+1FF8 (decimal 8184)
   defining Unicode char U+1FF9 (decimal 8185)
   defining Unicode char U+1FFA (decimal 8186)
   defining Unicode char U+1FFB (decimal 8187)
   defining Unicode char U+1FFC (decimal 8188)
   defining Unicode char U+1FFD (decimal 8189)
   defining Unicode char U+1FFE (decimal 8190)
   defining Unicode char U+2013 (decimal 8211)
   defining Unicode char U+2014 (decimal 8212)
   defining Unicode char U+2018 (decimal 8216)
   defining Unicode char U+2019 (decimal 8217)
   defining Unicode char U+201A (decimal 8218)
   defining Unicode char U+2030 (decimal 8240)
   defining Unicode char U+2039 (decimal 8249)
   defining Unicode char U+203A (decimal 8250)
   defining Unicode char U+20AC (decimal 8364)
   defining Unicode char U+2126 (decimal 8486)
   defining Unicode char U+10144 (decimal 65860)
   defining Unicode char U+10145 (decimal 65861)
   defining Unicode char U+10146 (decimal 65862)
   defining Unicode char U+10147 (decimal 65863)
) (/usr/share/texmf-dist/tex/latex/greek-fontenc/greek-fontenc.def
File: greek-fontenc.def 2015/08/04 v0.13.4 Common Greek font encoding definitio
ns
))
Package textgreek Info: Loaded fontmap: {eur/*/*}{U/eur/*/*} {phv/*/*}{U/psy/*/
*}. on input line 69.
) (/usr/share/texmf-dist/tex/latex/l3backend/l3backend-pdfmode.def
File: l3backend-pdfmode.def 2020-06-03 L3 backend support: PDF mode
\l__kernel_color_stack_int=\count189
\l__pdf_internal_box=\box93
) (./mwe.aux)
\openout1 = `mwe.aux'.

LaTeX Font Info:    Checking defaults for OML/cmm/m/it on input line 29.
LaTeX Font Info:    ... okay on input line 29.
LaTeX Font Info:    Checking defaults for OMS/cmsy/m/n on input line 29.
LaTeX Font Info:    ... okay on input line 29.
LaTeX Font Info:    Checking defaults for OT1/cmr/m/n on input line 29.
LaTeX Font Info:    ... okay on input line 29.
LaTeX Font Info:    Checking defaults for T1/cmr/m/n on input line 29.
LaTeX Font Info:    ... okay on input line 29.
LaTeX Font Info:    Checking defaults for TS1/cmr/m/n on input line 29.
LaTeX Font Info:    ... okay on input line 29.
LaTeX Font Info:    Checking defaults for OMX/cmex/m/n on input line 29.
LaTeX Font Info:    ... okay on input line 29.
LaTeX Font Info:    Checking defaults for U/cmr/m/n on input line 29.
LaTeX Font Info:    ... okay on input line 29.
LaTeX Font Info:    Checking defaults for LGR/cmr/m/n on input line 29.
LaTeX Font Info:    Trying to load font information for LGR+cmr on input line 2
9.
(/usr/share/texmf-dist/tex/latex/cbfonts-fd/lgrcmr.fd
File: lgrcmr.fd 2017/07/29 v1.2 Greek European Computer Regular
)
LaTeX Font Info:    ... okay on input line 29.
Package scrbase Info: activating english \contentsname on input line 29.
Package scrbase Info: activating english \listfigurename on input line 29.
Package scrbase Info: activating english \listtablename on input line 29.
\big at size=\dimen144
\c at maskedRefs=\count190
(/usr/share/texmf-dist/tex/latex/apacite/english.apc
File: english.apc 2013/07/21 v6.03 apacite language file
LaTeX Info: Redefining \BPBI on input line 129.
LaTeX Info: Redefining \BHBI on input line 130.
)
chapter 1.
LaTeX Font Info:    Trying to load font information for T1+cmss on input line 3
1.
(/usr/share/texmf-dist/tex/latex/base/t1cmss.fd
File: t1cmss.fd 2019/12/16 v2.5j Standard LaTeX font definitions
) (./mwe.bbl [1



{/usr/share/texmf-var/fonts/map/pdftex/updmap/pdftex.map}] [2


]

! Package inputenc Error: Keyboard character used is undefined
(inputenc)                in inputencoding `latin9'.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.18 ...health perspectives}, {\textbf 106}, 775??
                                                  ?792.
You need to provide a definition with \DeclareInputText 
or \DeclareInputMath before using this key.


! Package inputenc Error: Keyboard character used is undefined
(inputenc)                in inputencoding `latin9'.

See the inputenc package documentation for explanation.
Type  H <return>  for immediate help.
 ...                                              
                                                  
l.18 ...ealth perspectives}, {\textbf 106}, 775?
                                                  792.
You need to provide a definition with \DeclareInputText 
or \DeclareInputMath before using this key.

) [3] (./mwe.aux) ) 
Here is how much of TeX's memory you used:
 5625 strings out of 480478
 103384 string characters out of 5905906
 452495 words of memory out of 5000000
 21637 multiletter control sequences out of 15000+600000
 541818 words of font info for 36 fonts, out of 8000000 for 9000
 1141 hyphenation exceptions out of 8191
 43i,6n,72p,10119b,246s stack positions out of 5000i,500n,10000p,200000b,80000s
{/usr/share/texmf-dist/fonts/enc/dvips/base/8r.enc}{/usr/sha
re/texmf-dist/fonts/enc/dvips/cm-super/cm-super-t1.enc}</usr/share/texmf-dist/f
onts/type1/public/cm-super/sfsx2074.pfb></usr/share/texmf-dist/fonts/type1/urw/
palatino/uplb8a.pfb></usr/share/texmf-dist/fonts/type1/urw/palatino/uplr8a.pfb>
</usr/share/texmf-dist/fonts/type1/urw/palatino/uplri8a.pfb>
Output written on mwe.pdf (3 pages, 60572 bytes).
PDF statistics:
 32 PDF objects out of 1000 (max. 8388607)
 22 compressed objects within 1 object stream
 0 named destinations out of 1000 (max. 500000)
 1 words of extra memory for PDF output out of 10000 (max. 10000000)


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